NSP6 (rotavirus)

Gene 11 of Rotavirus encodes a nonstructural protein, NSP5 and also encodes NSP6, from an out of phase open reading frame.^[1] In contrast to the other rotavirus non-structural proteins, NSP6 was found to have a high rate of turnover, being completely degraded within 2h of synthesis. NSP6 was found to be a sequence independent nucleic acid binding protein, with similar affinities for ssRNA and dsRNA.^[2]

References

↑ Mohan KV, Atreya CD (December 2001). "Nucleotide sequence analysis of rotavirus gene 11 from two tissue culture-adapted ATCC strains, RRV and Wa". Virus Genes. 23 (3): 321–9. doi:10.1023/A:1012577407824. PMID 11778700.
↑ Rainsford EW, McCrae MA (December 2007). "Characterization of the NSP6 protein product of rotavirus gene 11". Virus Research. 130 (1–2): 193–201. doi:10.1016/j.virusres.2007.06.011. PMID 17658646.

Viral proteins (early and late)

DNA

Herpes simplex	Herpes simplex virus protein vmw65 HHV capsid portal protein

Hepatitis B	HBsAg HBcAg HBeAg HBx Hepatitis B virus DNA polymerase

Epstein–Barr	EBNA-1 EBNA-2 EBNA-3 LMP-1 LMP-2 EBER

RNA

Rotavirus

Influenza

capsid:	matrix protein M1 protein viral envelope M2 protein

glycoprotein:	Influenza hemagglutinin Neuraminidase

Parainfluenza

Parainfluenza hemagglutinin-neuraminidase

Mumps

Mumps hemagglutinin-neuraminidase

Measles

Measles hemagglutinin

RSV

Respiratory syncytial virus G protein

Hepatitis C

VSPs:	E1 E2

VNPs:	P7 NS2 NS3 NS4A NS4B NS5A NS5B

Structure and genome of HIV

VSPs:	gag pol Integrase Reverse transcriptase HIV-1 protease env gp120 gp41

VRAPs:	transactivators Tat Rev Vpr Nef Vif Vpu

Fusion protein

Gag-onc fusion protein

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