Haplogroup L-M20

Haplogroup L-M20
Possible time of origin	25,000-30,000 years BP[1]
Possible place of origin	South Asia
Ancestor	LT
Defining mutations	M11, M20, M61, M185, L656, L863, L878, L879 (Krahn & FTDNA 2013)
Highest frequencies	South Asians, Burusho, Kalash, Pashtuns, Tamil Kallars, Afshar village, Al-Raqqah, east Balochistan, northern Afghanistan, Chechens, South Tyrol

Haplogroup L-M20 is a human Y-DNA haplogroup. It is most commonly found in populations native to South Asia – especially Afghanistan, Pakistan and South India. The clade also occurs in Tajikistan and Anatolia, as well as at lower frequencies in Iran, the Caucasus and Central Asia.

The subclade L2 (L-L595), while it is extremely rare, is seldom found outside Western Europe.

L-M20 is defined by SNPs M11, M20, M61 and M185.

Phylogenetic tree

There are several confirmed and proposed phylogenetic trees available for haplogroup L-M20. The scientifically accepted one is the Y-Chromosome Consortium (YCC) one published in Karafet 2008 and subsequently updated. A draft tree that shows emerging science is provided by Thomas Krahn at the Genomic Research Center in Houston, Texas. The International Society of Genetic Genealogy (ISOGG) also provides an amateur tree.

This is Thomas Krahn at the Genomic Research Center's Draft tree Proposed Tree for haplogroup L-M20 (Krahn & FTDNA 2013).

• L-M20 M11, M20, M61, M185, L656, L863, L878, L879
  • L-M22 M22, M295, PAGES00121
    • L-M317 M317, L655
      • L-M349 M349
      • L-M274 M274
      • L-L1310 L1310
    • L-L1304 L1304
      • L-M27 M27, M76, P329.1, L1318, L1319, L1320, L1321
      • L-M357 M357
        • L-PK3 PK3
        • L-L1305 L1305, L1306, L1307
  • L-L595 L595
    • L-L864 L864, L865, L866, L867, L868, L869, L870, L877

Origins

Haplogroup L-M20 is strongly associated with South Asia, especially the Indus Valley area.

It has also been found at low frequencies among populations of Central Asia and South West Asia (including Arabia, Iraq, Syria, Turkey, Lebanon, Egypt, and Yemen) as well as in Southern Europe (especially areas adjoining the Mediterranean Sea).

L-M20 is a descendant haplogroup of haplogroup K-M9, and is believed to have first appeared approximately 30,000 years ago. Gareth Henson, administrator of the Haplogroup T project at FTDNA, has theorized "I think both T and L originated in the Iraq/Iran region...the branches of L all went in different directions (L1 southeast, L2 west and L3 northeast)."

Geographical distribution

Sengupta 2006 discovered three subbranches of haplogroup L: L-M76, L-M317, and L-M357. All three are found mostly in South Asia. In Pakistan, it has highest frequency in Baluchistan.^[2] In India, it has higher frequency among Dravidian castes, but is somewhat rarer in Indo-Aryan castes.^[3] They make a case for an indigenous origin of L-M76 in India, by arguing that the spatial distributions of both L-M76 HG frequency and associated microsatellite variance show a pattern of spread emanating from southern India. By linking haplogroup L-M76 to the Dravidian speakers, they simultaneously argue for an Indian origin of Dravidian languages (Sengupta 2006).

Preliminary evidence gleaned from non-scientific sources, such as individuals who have had their Y-chromosomes tested by commercial labs (Henson, Hrechdakian & FTDNA 2013), suggests that most European examples of Haplogroup L-M20 might belong to the subclade L-M317, which is, among South Asian populations, generally the rarest of the subclades of Haplogroup L.(Henson, Hrechdakian & FTDNA 2013)

South Asia

India

It has higher frequency among Dravidian castes (ca. 17-19%) but is somewhat rarer in Indo-Aryan castes (ca. 5-6%).^[3] It reaches up to 68% in some tribes and castes of Karnataka^[4] 38% in some castes and tribes of Gujarat and reaches up to 48% in some castes in Tamil Nadu.^[3][4] Earlier studies (e.g. Wells 2001) report a very high frequency (approaching 80%) of Haplogroup L-M20 in Tamil Nadu appear to have been due to extrapolation from data obtained from a sample of 84 Kallars, a Tamil-speaking higher ruler caste of Tamil Nadu, among whom 40 (approx. 48%) displayed the M20 mutation that defines Haplogroup L. The presence of haplogroup L-M20 is rare among tribal groups (ca. 5,6-7%) (Cordaux 2004, Sengupta 2006, and Thamseem 2006).

L-M20 was found 68% in the Korova tribe from Karnataka, 38% in the Bharwad caste from Junagarh district in Gujarat, 21% in Charan caste from Junagarh district in Gujarat and 17% in the Kare Vokkal tribe from Uttara Kannada in Karnataka.(Shah 2011) Also found at low frequency in other populations from Junagarh district and Uttara Kannada. It is found at 16.33% among the Gujar's of Jammu and Kashmir.^[5] It also occurs at 18.6% among the Konkanastha Brahmins of the Konkan region^[6] and at 15% among the Maratha's of Maharashtra.^[7] L-M20 is also found at 32.35% in the Vokkaligas and at 17.82% in the Lingayats of Karnataka.^[8] L-M20 is also found at 20.7% among the Ambalakarar, 16.7% among the Iyengar and 17.2% among the Iyer castes of Tamil Nadu.^[7] L-M11 is found in frequncies of 8-16% among Indian Jews.^[9] 2% of Siddis have also been reported with L-M11.(Shah 2011) Haplogroup L-M20 is currently present in the Indian population at an overall frequency of ca. 7-15%.^{[Footnote 1]}

Pakistan

L-M357 highest frequency and diversity is found in Balochistan at 28%.^[2] with a moderate distribution among the general Pakistani population at 11.6% (Firasat 2007)). Many of these are found in their Afghanistan counterparts as well, such as with the Pashtuns and Balochis. L-M357 is found frequently among Burusho (approx. 12% (Firasat 2007)) and Pashtuns (approx. 7% (Firasat 2007)),

L1a and L1c-M357 are found at 24% among Balochis, L1a and L1c are found at 8% among the Dravidian-speaking Brahui, L1c is found at 25% among Kalash, L1c is found at 15% among Burusho, L1a-M76 and L1b-M317 are found at 2% among the Makranis, and L1c is found at 3.6% of Sindhis according to Julie di Cristofaro et al. 2013.^[10] L3a is found at 23% among the Nuristanis in both Pakistan and Afghanistan.^[11]

L-PK3 is found in approximately 23% of Kalash in northwest Pakistan(Firasat 2007).

Afghanistan

A study on the Pashtun male lineages in Afghanistan, found that Haplogroup L-M20, with an overall frequency of 9.5%, is the second most abundant male lineage among them.^[12] It exhibits substantial disparity in its distribution on either side of the Hindu Kush range, with 25% of the northern Afghan Pashtuns belonging to this lineage, compared with only 4.8% of males from the south.^[13] Specifically, paragroup L3*-M357 accounts for the majority of the L-M20 chromosomes among Afghan Pashtuns in both the north (20.5%) and south (4.1%). ^[14] An earlier study involving a lesser number of samples had reported that L1c comprises 12.24% of the Afghan Pashtun male lineages.^[15] L1c-M357 occurs significantly in the Burusho and Kalash(15% and 25%), as well.^[16] L1c is also found at 7.69% among the Balochs of Afghanistan.^[17] However L1a-M76 occurs in a much more higher frequency among the Balochs (20^[18] to 61.54%),^[19] and is found at lower levels in Kyrgyz, Tajik, Uzbek and Turkmen populations.^[20]

Caucasus & Middle East

L-M20 was found in 51% of Syrians from Al-Raqqah, a northern Syrian city in which its previous inhabitants have been wiped out by the Mongols and repopulated in recent times by local Bedouin populations and Chechen war refugees (El-Sibai 2009). In a small sample of Israeli Druze haplogroup L-M20 was found in 7 out of 20 (35%). However, studies done on bigger samples showed that L-M20 averages 5% in Israeli Druze,^{[Footnote 2]} 8% in Lebanese Druze,^{[Footnote 3]} and it was not found in a sample of 59 Syrian Druze. Haplogroup L-M20 has been found in 2.0% (1/50) (Wells 2001) to 5.25% (48/914) of Lebanese (Zalloua 2008).

Central Asia

East Asia

Researchers studying samples of Y-DNA from populations of East Asia have rarely tested their samples for any of the mutations that define Haplogroup L. However, mutations for Haplogroup L have been tested and detected in samples of Balinese (13/641 = 2.0% L-M20), Dolgans from Sakha and Taymyr (1/67 = 1.5% L-M20) and Koreans (3/506 = 0.6% L-M20).^[21][22][23]

Europe

An article by O. Semino et al. published in the journal Science (Volume 290, 10 November 2000) reported the detection of the M11-G mutation, which is one of the mutations that defines Haplogroup L, in approximately 1% to 3% of samples from Georgia, Greece, Hungary, Calabria, and Andalusia. The sizes of the samples analyzed in this study were generally quite small, so it is possible that the actual frequency of Haplogroup L-M20 among Mediterranean European populations may be slightly lower or higher than that reported by Semino et al., but there seems to be no study to date that has described more precisely the distribution of Haplogroup L-M20 in Southwest Asia and Europe.

Subclade distribution

L1 (M295)

L-M295 is found from Western Europe to South Asia.^{[Footnote 5]}

The L1 subclade is also found at low frequencies on the Comoros Islands.^[24]

L1a1 (M27)

L-M27 is found in 14,5% of Indians and 15% of Sri Lankans, with a moderate distribution in other populations of Pakistan, southern Iran, and European but more in Middle East Arab populations.Karafet 2016. There is a very minor presence among Siddi's(2%),^[25] as well.

L1a2 (M357)

L-M357 is found frequently among Burushos, Kalashas, Chechens and Pashtuns, with a moderate distribution among other populations in Pakistan, Georgia, northern Iran, India, the UAE, and Saudi Arabia.

L-PK3

L-PK3, which is downstream of L-M357,^[26] is found frequently among Kalash.

L1b (M317)

L-M317 is found at low frequency in Central Asia, Southwest Asia, and Central Europe.

L1b1 (M349)

L-M349 is principally found in Europe.

L2 (L595)

L-L595 is found only in Europe from Ireland, Iberian Peninsula and Sardinia to Eastern Europe and their highest frequency is found in Estonia,^{[Footnote 5]} Scozzari 2001, Lappalainen 2008.

Ancient DNA

Areni-1 cave ("Bird's Eye cave"), Vayots-Dzor Province, Armenia, c. 4161 BCE

Elite Hunnic skeleton remains, Hungary, Pannonian Basin

Nomenclature

Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.

The Y-Chromosome Consortium tree

This is the official scientific tree produced by the Y-Chromosome Consortium (YCC). The last major update was in 2008 (Karafet 2008). Subsequent updates have been quarterly and biannual. The current version is a revision of the 2010 update.^[28]

Original research publications

The following research teams per their publications were represented in the creation of the YCC Tree.

See also

References

Footnotes

Works cited

Journals

Websites

• Genebase (2006). "Genebase Tutorials: Learn about Y-chromosome Haplogroup L". 
• Krahn, T.; FTDNA. "FTDNA Draft Y-DNA Tree (AKA YTree)". Family Tree DNA. Retrieved 2013.  Check date values in: |access-date= (help)
• Henson, G.; Hrechdakian, P.; FTDNA (2013). "L – The Y-Haplogroup L Project". Retrieved 2013.  Check date values in: |access-date= (help)

External links

• Spread of Haplogroup L, from National Geographic
• The India Genealogical Project