2-Pyridone

2-Pyridone
2-Pyridone molecule (lactam form)
2-Pyridone molecule (lactim form)
Names
Preferred IUPAC name
Pyridin-2(1H)-one
Other names
2(1H)-Pyridinone
2(1H)-Pyridone
1H-Pyridine-2-one
2-Pyridone
1,2-Dihydro-2-oxopyridine
1H-2-Pyridone
2-Oxopyridone
2-Pyridinol
2-Hydroxypyridine
Identifiers
142-08-5 YesY
3D model (Jmol) Interactive image
Interactive image
ChEBI CHEBI:16540 YesY
ChEMBL ChEMBL662 YesY
ChemSpider 8537 YesY
ECHA InfoCard 100.005.019
RTECS number UV1144050
Properties
C5H5NO
Molar mass 95.10 g·mol−1
Appearance Colourless crystalline solid
Density 1.39 g/cm³
Melting point 107.8 °C (226.0 °F; 380.9 K)
Boiling point 280 °C (536 °F; 553 K) decomp.
Solubility in other solvents Soluble in water,
methanol, acetone
Acidity (pKa) 11.65
UV-vis (λmax) 293 nm (ε 5900, H2O soln)
Structure
Orthorhombic
planar
4.26 D
Hazards
Main hazards irritating
Safety data sheet See: data page
R-phrases R36 R37 R38
S-phrases S26 S37/39
NFPA 704
Flammability code 1: Must be pre-heated before ignition can occur. Flash point over 93 °C (200 °F). E.g., canola oil Health code 2: Intense or continued but not chronic exposure could cause temporary incapacitation or possible residual injury. E.g., chloroform Reactivity (yellow): no hazard code Special hazards (white): no codeNFPA 704 four-colored diamond
1
2
Flash point 210 °C (410 °F; 483 K)
Related compounds
Other anions
 2-Pyridinolate
Other cations
 2-Hydroxypyridinium-ion
alcohol, lactam, lactim,
pyridine, ketone
Related compounds
 pyridine, thymine, cytosine,
uracil, benzene
Supplementary data page
Refractive index (n),
Dielectric constant (εr), etc.
Thermodynamic
data
 Phase behaviour
solid–liquid–gas
UV, IR, NMR, MS
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
YesY verify (what is YesYN ?)
Infobox references

2-Pyridone is an organic compound with the formula C
5H
4NH(O). This colourless crystalline solid is used in peptide synthesis. It is well known to form hydrogen bonded structures somewhat related to the base-pairing mechanism found in RNA and DNA. It is also a classic case of a molecule that exists as tautomers.

Structure

The most prominent feature of 2-pyridone is the amide group; a nitrogen with a hydrogen bound to it and a keto group next to it. In peptides, amino acids are linked by this pattern, a feature responsible for some remarkable physical and chemical properties. In this and similar molecules, the hydrogen bound to the nitrogen is suitable to form strong hydrogen bonds to other nitrogen- and oxygen-containing species.

Tautomerism

The hydrogen attached to the nitrogen can also move to the oxygen. Through movement of this hydrogen and electrons, the second tautomer form, 2-hydroxypyridine is formed. This lactam lactim tautomerism can also be found in other molecules with a similar structure.[1]

Tautomerism in the solid state

The predominant solid state form is 2-pyridone. This has been confirmed by X-ray crystallography which shows that the hydrogen in solid state is closer to the nitrogen than to the oxygen (because of the low electron density at the hydrogen the exact positioning is difficult), and IR-spectroscopy, which shows that the C=O longitudinal frequency is present whilst the O-H frequencies are absent.[2][3][4][5]

Tautomerism in solution

The determination of which of the two tautomeric forms is present in solution has been the subject of many publications. The energy difference appears to be very small and is dependent on the polarity of the solvent. Non-polar solvents favour the formation of 2-hydroxypyridine whereas polar solvents such as alcohols and water favour the formation of 2-pyridone.[1][6][7][8][9][10][11][12][13]

The energy difference for the two tautomers in the gas phase was measured by IR-spectroscopy to be 2.43 to 3.3 kJ/mol for the solid state and 8.95 kJ/mol and 8.83 kJ/mol for the liquid state.[14][15][16]

Tautomerisation mechanism A

The single molecular tautomerisation has a forbidden 1-3 suprafacial transition state and therefore has a high energy barrier for this tautomerisation, which was calculated with theoretical methods to be 125 or 210 kJ/mol. The direct tautomerisation is energetically not favoured. There are other possible mechanisms for this tautomerisation.[16]

Dimerisation

2-Pyridone and 2-hydroxypyridine can form dimers with two hydrogen bonds.[17]

Aggregation in the solid state

In the solid state the dimeric form is not present; the 2-pyridones form a helical structure over hydrogen bonds. Some substituted 2-pyridones form the dimer in solid state, for example the 5-methyl-3-carbonitrile-2-pyridone. The determination of all these structures was done by X-ray crystallography. In the solid state the hydrogen is located closer to the oxygen so it could be considered to be right to call the colourless crystals in the flask 2-pyridone.[1][2][3][4][5]

Aggregation in solution

In solution the dimeric form is present; the ratio of dimerisation is strongly dependent on the polarity of the solvent. Polar and protic solvents interact with the hydrogen bonds and more monomer is formed. Hydrophobic effects in non-polar solvents lead to a predominance of the dimer. The ratio of the tautomeric forms is also dependent on the solvent. All possible tautomers and dimers can be present and form an equilibrium, and the exact measurement of all the equilibrium constants in the system is extremely difficult.[17][18][19][20][21][22][23][24][25][26]

(NMR-spectroscopy is a slow method, high resolution IR-spectroscopy in solvent is difficult, the broad absorption in UV-spectroscopy makes it hard to discriminate 3 and more very similar molecules).

Some publications only focus one of the two possible patterns, and neglect the influence of the other. For example, to calculation of the energy difference of the two tautomers in a non-polar solution will lead to a wrong result if a large quantity of the substance is on the side of the dimer in an equilibrium.

Tautomerisation mechanism B

The direct tautomerisation is not energetically favoured, but a dimerisation followed by a double proton transfer and dissociation of the dimer is a self catalytic path from one tautomer to the other. Protic solvents also mediate the proton transfer during the tautomerisation.

Synthesis

2-Pyrone can be obtained by a cyclisation reaction, and converted to 2-pyridone via an exchange reaction with ammonia:

Pyridine forms an N-oxide with some oxidation agents such as hydrogen peroxide. This pyridine-N-oxide undergoes a rearrangement reaction to 2-pyridone in acetic anhydride:

In the Guareschi-Thorpe condensation cyanoacetamide reacts with a 1,3-diketone to a 2-pyridone.[18][19] The reaction is named after Icilio Guareschi and Jocelyn Field Thorpe.[20][21]

Chemical properties

Catalytic activity

2-Pyridone catalyses a variety of proton-dependent reactions, for example the aminolysis of esters. In some cases, molten 2-pyridone is used as a solvent. The mutarotation of sugars and that 2-pyridone has a large effect on the reaction from activated esters with amines in nonpolar solvent, which is attributed to its tautomerisation and utility as a ditopic receptor. Current interest focuses on proton transfer from 2-pyridone and its tautomer, using isotope labeling, kinetics and quantum chemical methods to determine the rate determining step in the reaction mechanism.[22][23][27]

Coordination chemistry

2-Pyridone and some derivatives serve as ligands in coordination chemistry, usually as a 1,3-bridging ligand akin to carboxylate.[24]

In nature

2-Pyridone is not naturally occurring, but a derivative has been isolated as a cofactor in certain hydrogenases.[25]

Environmental behavior

2-Pyridone is rapidly degraded by microorganisms in the soil environment, with a half life less than one week.[26] Organisms capable of growth on 2-pyridone as a sole source of carbon, nitrogen, and energy have been isolated by a number of researchers. The most extensively studied 2-pyridone degrader is the gram positive bacterium Arthrobacter crystallopoietes,[28] a member of the phylum Actinobacteria which includes numerous related organisms that have been shown to degrade pyridine or one or more alkyl-, carboxyl-, or hydroxyl-substituted pyridines. 2-Pyridone degradation is commonly initiated by mono-oxygenase attack, resulting in a diol, such as 2,5-dihydroxypyridine, which is metabolized via the maleamate pathway. Fission of the ring proceeds via action of 2,5-dihydroxypyridine monooxygenase, which is also involved in metabolism of nicotinic acid via the maleamate pathway. In the case of Arthrobacter crystallopoietes, at least part of the degradative pathway is plasmid-borne.[29] Pyridine diols undergo chemical transformation in solution to form intensely colored pigments. Similar pigments have been observed in quinoline degradation,[30] also owing to transformation of metabolites, however the yellow pigments often reported in degradation of many pyridine solvents, such as unsubstituted pyridine or picoline, generally result from overproduction of riboflavin in the presence of these solvents.[31] Generally speaking, degradation of pyridones, dihydroxypyridines, and pyridinecarboxylic acids is commonly mediated by oxygenases, whereas degradation of pyridine solvents often is not, and may in some cases involve an initial reductive step.[29]

See also

References

  1. 1 2 3 Forlani L.; Cristoni G.; Boga C.; Todesco P. E.; Del Vecchio E.; Selva S.; Monari M. (2002). "Reinvestigation of tautomerism of some substituted 2-hydroxypyridines". Arkivoc. XI: 198–215.
  2. 1 2 Yang H. W.; Craven B. M. (1998). "Charge Density of 2-Pyridone". Acta Crystallogr. B. 54 (6): 912–920. doi:10.1107/S0108768198006545. PMID 9880899.
  3. 1 2 Penfold B. R. (1953). "The Electron Distribution in Crystalline Alpha Pyridone". Acta Crystallogr. 6 (7): 591–600. doi:10.1107/S0365110X5300168X.
  4. 1 2 Ohms U.; Guth H.; Heller E.; Dannöhl H.; Schweig A. (1984). "Comparison of Observed and Calculated Electron-Density 2-Pyridone, C5H5NO, Crystal-Structure Refinements at 295K and 120K, Experimental and Theoretical Deformation Density Studies". Z. Kristallogr. 169: 185–200. doi:10.1524/zkri.1984.169.14.185.
  5. 1 2 Almlöf J.; Kvick A.; Olovsson I. (1971). "Hydrogen Bond Studies Crystal Structure of Intermolecular Complex 2-Pyridone-6-Chloro-2-Hdroxypyridine". Acta Crystallogr. B. 27 (6): 1201–1208. doi:10.1107/S0567740871003753.
  6. ↑ Vögeli U.; von Philipsborn W. (1973). "C-13 and H-1 NMR Spectroscopie Studies on Structure of N-Methyle-3-Pyridone and 3-Hydroypyridine". Org Magn Reson. 5 (12): 551–559. doi:10.1002/mrc.1270051202.
  7. ↑ Specker H.; Gawrosch H. (1942). "Ultraviolet absorption of benztriaxole, pryridone and its salts". Chem. Ber. (75): 1338–1348.
  8. ↑ Leis D. G.; Curran B. C. (1945). "Electric Moments of Some Gamma-Substituted Pyridines". Journal of the American Chemical Society. 67 (67): 79–81. doi:10.1021/ja01217a028.
  9. ↑ Albert A.; Phillips J. N. (1956). "Ionisation Constants of Heterocyclic Substances Hydroxy-Derivates of Nitrogenous Six-Membered Ring-Compounds". J. Chem. Soc.: 1294–1304. doi:10.1039/jr9560001294.
  10. ↑ Cox R. H.; Bothner-By A. A (1969). "Proton Magnetic Resonance Spectra of Tautomeric Substituted Pyridines and Their Conjugated Acides". J. Phys. Chem. 73 (73): 2465–2468. doi:10.1021/j100842a001.
  11. ↑ Aksnes DW, Kryvi; Kryvi, Håkon; Samuelson, Olof; Sjöstrand, Elisabeth; Svensson, Sigfrid (1972). "Substituent and Solvent Effects in Proton Magnetic -Resonance (PMR) Spectra of 6 2-Substituted Pyridines". Acta Chem. Scand. 26 (26): 2255–2266. doi:10.3891/acta.chem.scand.26-2255.
  12. ↑ Aue DH, Betowski LD, Davidson WR, Bower MT, Beak P (1979). "Gas-Phase Basicities of Amides and Imidates - Estimation of Protomeric Equilibrium-Constantes by the Basicity methode in the Gas-Phase". Journal of the American Chemical Society. 101 (101): 1361–1368. doi:10.1021/ja00500a001.
  13. ↑ Frank J., Alan R. Katritzky (1976). "Tautomeric pyridines. XV. Pyridone-hydroxypyridine equilibria in solvents of different polarity". J Chem Soc Perkin Trans 2 (12): 1428–1431. doi:10.1039/p29760001428.
  14. ↑ Brown R. S.; Tse A.; Vederas J. C. (1980). "Photoelectro-Determined Core Binding Energies and Predicted Gas-Phase Basicities for the 2-Hydroxypyridine 2-Pyridone System". Journal of the American Chemical Society. 102 (102): 1174–1176. doi:10.1021/ja00523a050.
  15. ↑ Beak P. (1977). "Energies and Alkylation of Tautomeric Heterocyclic-Compounds - Old Problems New Answers". Acc. Chem. Res. 10 (10): 186–192. doi:10.1021/ar50113a006.
  16. 1 2 Abdulla H. I.; El-Bermani M. F. (2001). "Infrared studies of tautomerism in 2-hydroxypyridine 2-thiopyridine and 2-aminopyridine". Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. 57 (57): 2659–2671. doi:10.1016/S1386-1425(01)00455-3.
  17. 1 2 Hammes GG, Lillford PJ (1970). "A Kinetic and Equilibrium Study of Hydrogen Bond Dimerization of 2-Pyridone in Hydrogen Bonding Solvent". J. Am. Chem. Soc. 92 (92): 7578–7585. doi:10.1021/ja00729a012.
  18. 1 2 Gilchrist, T.L. (1997). Heterocyclic Chemistry ISBN 0-470-20481-8
  19. 1 2 Rybakov V. R.; Bush A. A.; Babaev E. B.; Aslanov L. A. (2004). "3-Cyano-4,6-dimethyl-2-pyridone (Guareschi Pyridone)". Acta Crystallogr E. 6 (2): o160–o161. doi:10.1107/S1600536803029295.
  20. 1 2 I. Guareschi (1896). Mem. Reale Accad. Sci. Torino II. 46, 7, 11, 25. Missing or empty |title= (help)
  21. 1 2 Baron, H.; Remfry, F. G. P.; Thorpe, J. F. (1904). "CLXXV.-The formation and reactions of imino-compounds. Part I. Condensation of ethyl cyanoacetate with its sodium derivative". J. Chem. Soc., Trans. 85: 1726–1761.
  22. 1 2 Fischer C. B.; Steininger H.; Stephenson D. S.; Zipse H. (2005). "Catalysis of Aminolysis of 4-Nitrophenyl Acetate by 2-Pyridone". Journal for Physical Organic Chemistry. 18 (9): 901–907. doi:10.1002/poc.914.
  23. 1 2 L.-H. Wang; H. Zipse (1996). "Bifunctional Catalysis of Ester Aminolysis - A Computational and Experimental Study" (subscription required). Lieb. Ann. (10): 1501–1509.
  24. 1 2 Rawson J. M.; Winpenny R. E. P. (1995). "The coordination chemistry of 2-pyridones and its derivatives". Coordination Chemistry Reviews. 139 (139): 313–374. doi:10.1016/0010-8545(94)01117-T.
  25. 1 2 Shima, S.; Lyon, E. J.; Sordel-Klippert, M.; Kauss, M.; Kahnt, J.; Thauer, R. K.; Steinbach, K.; Xie, X.; Verdier, L. and Griesinger, C., "Structure elucidation: The cofactor of the iron-sulfur cluster free hydrogenase Hmd: structure of the light-inactivation product", Angew. Chem. Int. Ed., 2004, 43, 2547-2551.
  26. 1 2 Sims, Gerald K.; S (1985). "Degradation of Pyridine Derivatives in Soil". Journal of Environmental Quality. 14 (4): 580–584. doi:10.2134/jeq1985.00472425001400040022x.
  27. ↑ Fischer C. B.; Polborn K.; Steininger H.; Zipse H. (2004). "Synthesis and Solid-State Structures of Alkyl-Substituted 3-Cyano-2-pyridones" (subscription required). Zeitschrift für Naturforschung (59b): 1121–1131.
  28. ↑ Ensign, Jerald C.; Rittenberg, Sydney C. (1963). "A crystalline pigment produced from 2-hydroxypyridine by arthrobacter crystallopoietes n.sp". Archiv für Mikrobiologie. 47 (2): 137–153. doi:10.1007/BF00422519.
  29. 1 2 Sims, G. K.; O'Loughlin, E.J.; Crawford, Ronald (1989). "Degradation of pyridines in the environment" (PDF). CRC Critical Reviews in Environmental Control. 19 (4): 309–340. doi:10.1080/10643388909388372.
  30. ↑ Oloughlin, E; Kehrmeyer, S; Sims, G (1996). "Isolation, characterization, and substrate utilization of a quinoline-degrading bacterium". International Biodeterioration & Biodegradation. 38 (2): 107–118. doi:10.1016/S0964-8305(96)00032-7.
  31. ↑ Sims, Gerald K.; O (1992). "Riboflavin Production during Growth of Micrococcus luteus on Pyridine". Applied and Environmental Microbiology. 58 (10): 3423–3425. PMC 183117Freely accessible. PMID 16348793.

General references

  1. Engdahl K.; Ahlberg P. (1977). Journal Chemical Research: 340–341.  Missing or empty |title= (help)
  2. Bensaude O, Chevrier M, Dubois J (1978). "Lactim-Lactam Tautomeric Equilibrium of 2-Hydroxypyridines. 1.Cation Binding, Dimerization and Interconversion Mechanism in Aprotic Solvents. A Spectroscopic and Temperature-Jump Kinetic Study". J. Am. Chem. Soc. 100 (22): 7055–7066. doi:10.1021/ja00490a046. 
  3. Bensaude O, Dreyfus G, Dodin G, Dubois J (1977). "Intramolecular Nondissociative Proton Transfer in Aqueous Solutions of Tautomeric Heterocycles: a Temperature-Jump Kinetic Study". J. Am. Chem. Soc. 99 (13): 4438–4446. doi:10.1021/ja00455a037. 
  4. Bensaude O, Chevrier M, Dubois J (1978). "Influence of Hydration upon Tautomeric Equilibrium". Tetrahedron Lett. 19 (25): 2221–2224. doi:10.1016/S0040-4039(01)86850-7. 
  5. Hammes GG, Park AC (1969). "Kinetic and Thermodynamic Studies of Hydrogen Bonding". J. Am. Chem. Soc. 91 (4): 956–961. doi:10.1021/ja01032a028. 
  6. Hammes GG, Spivey HO (1966). "A Kinetic Study of the Hydrogen-Bond Dimerization of 2-Pyridone". J. Am. Chem. Soc. 88 (8): 1621–1625. doi:10.1021/ja00960a006. PMID 5942979. 
  7. Beak P, Covington JB, Smith SG (1976). "Structural Studies of Tautomeric Systems: the Importance of Association for 2-Hydroxypyridine-2-Pyridone and 2-Mercaptopyridine-2-Thiopyridone". J. Am. Chem. Soc. 98 (25): 8284–8286. doi:10.1021/ja00441a079. 
  8. Beak P, Covington JB, White JM (1980). "Quantitave Model of Solvent Effects on Hydroxypyridine-Pyridone and Mercaptopyridine-Thiopyridone Equilibria: Correlation with Reaction-Field and Hydrogen-Bond Effects". J. Org. Chem. 45 (8): 1347–1353. doi:10.1021/jo01296a001. 
  9. Beak P, Covington JB, Smith SG, White JM, Zeigler JM (1980). "Displacement of Protomeric Equilibria by Self-Association: Hydroxypyridine-Pyridone and Mercaptopyridine-Thiopyridone Isomer Pairs". J. Org. Chem. 45 (8): 1354–1362. doi:10.1021/jo01296a002. 
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