YASARA
| Original author(s) |
Elmar Krieger Jacobus van Meel |
|---|---|
| Developer(s) |
YASARA Biosciences WHAT IF Foundation Spronk NMR Consultancy |
| Initial release | November 1993 |
| Stable release |
16.7.22
/ 22 July 2016 |
| Development status | Active |
| Written in | C, assembly, Python |
| Operating system | Windows, Linux, OS X |
| Platform | x86 |
| Available in | English |
| Type | Molecular modelling |
| License | Proprietary, free version for elementary structure work |
| Website |
www |
Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number of scientific articles mentioning the software.[1] The free version of YASARA[2] is well suited to bioinformatics education. A series of freely available bioinformatics courses exist that use this software.
Students working on an educational task using YASARA.
See the Center for Molecular and Biomolecular Informatics (CMBI) education pages for a series of examples.[3]
- Krieger E, Koraimann G, Vriend G (May 2002). "Increasing the precision of comparative models with YASARA NOVA—a self-parameterizing force field". Proteins. 47 (3): 393–402. doi:10.1002/prot.10104. PMID 11948792.
- Modelling:
Krieger E, Vriend G (Feb 2002). "Models@Home: distributed computing in bioinformatics using a screensaver based approach". Bioinformatics. 18 (2): 315–8. doi:10.1093/bioinformatics/18.2.315. PMID 11847079. - Dynamics:
Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (Dec 2004). "Making optimal use of empirical energy functions: force-field parameterization in crystal space". Proteins. 57 (4): 678–83. doi:10.1002/prot.20251. PMID 15390263.
Learning to dock ligands with YASARA.
See also
- List of molecular graphics systems
- Comparison of software for molecular mechanics modeling
- Molecular graphics
- Molecular design software
References
External links
This article is issued from Wikipedia - version of the 9/22/2016. The text is available under the Creative Commons Attribution/Share Alike but additional terms may apply for the media files.