Stemloc
Developer(s) | Ian Holmes (UC Berkeley) |
---|---|
Stable release |
1
|
Operating system | UNIX, Linux, Mac, Cygwin on Windows XP |
Type | Bioinformatics tool |
Licence | Open source |
Website | Stemloc homepage |
Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of the Sankoff algorithms for simultaneous structure prediction and sequence alignment of multiple RNAs.
Stemloc can be downloaded as part of the DART software package. It accepts input files in either FASTA or Stockholm format.
References
- Holmes I. (2005) Accelerated probabilistic inference of RNA structure evolution. BMC Bioinformatics. 2005 Mar 24;6:73.
External links
This article is issued from Wikipedia - version of the 9/10/2016. The text is available under the Creative Commons Attribution/Share Alike but additional terms may apply for the media files.