Pseudomonas sRNA

Pseudomonas sRNA are non-coding RNAs (ncRNA) that were predicted by the bioinformatic program SRNApredict2. This program identifies putative sRNAs by searching for co-localization of genetic features commonly associated with sRNA-encoding genes and the expression of the predicted sRNAs was subsequently confirmed by Northern blot analysis. These sRNAs have been shown to be conserved across several pseudomonas species but their function is yet to be determined.^[1]

References

↑ Livny, J.; Brencic, A.; Lory, S.; Waldor, K. (2006). "Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2" (Free full text). Nucleic Acids Research. 34 (12): 3484–3493. doi:10.1093/nar/gkl453. ISSN 0305-1048. PMC 1524904. PMID 16870723.

Gallery of Pseudomonas small RNA secondary structure images

P2: Secondary structure taken from the Rfam database. Family RF01672

P10: Secondary structure taken from the Rfam database. Family RF01668

P13: Secondary structure taken from the Rfam database. Family RF01665

P14: Secondary structure taken from the Rfam database. Family RF01669

P17: Secondary structure taken from the Rfam database. Family RF01670

P18: Secondary structure taken from the Rfam database. Family RF01671

P20: Secondary structure taken from the Rfam database. Family RF01673

P27: Secondary structure taken from the Rfam database. Family RF01674

P29: Secondary structure taken from the Rfam database. Family RF01675

P31: Secondary structure taken from the Rfam database. Family RF01676

P35: Secondary structure taken from the Rfam database. Family RF01677

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Pseudomonas sRNA

See also

References