Amorpha-4,11-diene synthase

Amorpha-4,11-diene synthase
Identifiers
EC number 4.2.3.24
Databases
IntEnz IntEnz view
BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
PRIAM profile
PDB structures RCSB PDB PDBe PDBsum

In enzymology, an amorpha-4,11-diene synthase (ADS) (EC 4.2.3.24) is an enzyme that catalyzes the chemical reaction

2-trans,6-trans-farnesyl diphosphate ⇌ amorpha-4,11-diene + diphosphate

Hence, this enzyme has one substrate, 2-trans,6-trans-farnesyl diphosphate, and two products, amorpha-4,11-diene and diphosphate.

This enzyme belongs to the family of lyases, specifically those carbon-oxygen lyases acting on phosphates. The systematic name of this enzyme class is 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (amorpha-4,11-diene-forming). This enzyme is also called amorphadiene synthase.

This enzyme is mainly found in Artemisia annua, a temperate Asian native flowering plant, and ADS catalyzes the first committed step in the antimalarial drug artemisinin synthesis.

Enzyme Properties

Physical Properties

Amorpha-4,11-diene synthase is a 533 amino acid long protein with a molecular weight of 62.2 kDa and isoelectric point of 5.25.[1]

ADS shows a pH optimum at pH 6.5 and a minimum at pH 7.5.

With Mg2+, Mn2+ and Co2+ as cofactors, large enzyme activity observed, with Ni2+, low activity observed, and with Cu2+ and Zn2+, essentially no activity observed.[2]

Evolution

ADS is a highly conserved protein similar to other proteins with analogous functionality. The deduced amino acid sequence is 32 to 51% identical with the sequence of other known sesquiterpene cyclases from angiosperms (flowering plants) meaning the enzymes have a common ancestry.[3] More specifically, it has a highly conserved substrate binding site with an aspartate rich DDxxD motif.[1]

Expression

ADS is expressed 16-fold higher in the leaves than in roots of the Artemisia annua plant and 10-fold higher than in the stems showing a tissue-specific expression pattern.[4]

Products

While amorpha-4,11-diene is the main project of ADS, the purified enzyme has been shown to produce at least 16 different products. These additional products include the olefins (E)-β-farnesene, amorpha-4,7(11)-diene, γ-humulene and β-sesquiphellandrene, and the oxygenated sesquiterpenes amorpha-4-en-11-ol, amorpha-4-en-7-ol, and α-bisabolol.[2] About 97.5% of the products are olefins and the other 2.5% are oxgenated sesquiterpenes.[3]

Figure 1: ADS regulation by SS mRNA

Regulation

Two forms of ADS regulation include environmental induction and biochemical regulatory switches. Under normal conditions, ADS is expressed at low levels in Artemisia annua; however, when exposed to cold, heat shock, or UV light, the ADS becomes upregulated.[5] Corresponding with this in nature, cold-acclimated Artemisia annua express higher levels of ADS than plants under normal conditions.[6]

Regulatory switches help control levels of ADS. Since enzyme substrate Farnesyl diphosphate has many uses in addition to forming amorpha-4,11-diene, these other pathways regulate ADS. One such pathway is sterol biosynthesis, and in fact, the enzyme squalene synthase (SS) is considered a regulatory switch for ADS. When SS cDNA, which reduces SS mRNA concentration and therefore reduces expression of SS, is introduced into the plant cells, mRNA levels of ADS dramatically increased [7](Figure 1).

Mechanism

ADS catalyzes the reaction of farnesyl diphosphate(FPP) to amorpha-4,11-diene (Figure 2).

Figure 2: ADS Mechanism

The following reaction mechanism has been supported with experimental data:[8]

  1. Isomerization of FPP to (R)-nerolidyl diphosphate (NPP)
  2. Ionization of NPP
  3. C-1,C-6-ring closure to generate a bisaboyl cation
  4. 1,2-hydride shift
  5. 1,10-ring closure
  6. Deprotonation at either C-12 or C-13

Industrial Applications

Amorpha-4-11-diene synthase catalyses the first step in the synthesis of antimalarial drug artemisinin by converting ubiquitous farnesyl diphosphate into the precursor amorpha-4,11-diene.[9][10] Armorpha-4,11-diene undergoes multiple steps to become artemisinic acid and finally artemisinin (Figure 3).

Figure 23 Amorpha-4,11-diene to Artemisinin

Artemisinin is naturally synthesized by the native Chinese plant Artemisia annua; however due to low plant tissue extraction yields and long growing seasons, alternative ways including metabolic engineering to produce artemisinin are being considered.[11] ADS has been cloned and expressed in bacteria cells as a way to produce artemisinin.[12] Because ADS is the first committed and limiting step of artemisinin biosynthesis, increasing ADS levels should increase artemisinin yield. However, ADS is not the only bottle neck in artemisinin production, so additional genes are needed to increase yield.[13] A way to do this has been to increase the flux towards ADS by producing more FPP from the mevalonate pathway. In fact, the over-expression of Amorpha-4-11-diene synthase coupled with expression of yeast's mevalonate pathway has shown to increase yield and production of artemisinin precursor amorpha-4,11-diene.[14]

Scientists from the company Amyris have developed a method for high-level production of artemisinin. One of the synthetic genes in this procedure is ADS from Artemisia annua. The semi-synthetic production of artemisinin by Amyris has the potential to lower the cost of antimalarial treatments thus making them more readily available to the developing world.[15]

References

  1. 1 2 Alam P, Kiran U, Ahmad MM, Kamaluddin, Khan MA, Jhanwar S, Abdin M (2010). "Isolation, characterization and structural studies of amorpha - 4, 11-diene synthase (ADS(3963)) from Artemisia annua L". Bioinformation. 4 (9): 421–9. doi:10.6026/97320630004421. PMC 2951637Freely accessible. PMID 20975893.
  2. 1 2 Picaud S, Olofsson L, Brodelius M, Brodelius PE (2005). "Expression, purification, and characterization of recombinant amorpha-4,11-diene synthase from Artemisia annua L". Arch. Biochem. Biophys. 436 (2): 215–26. doi:10.1016/j.abb.2005.02.012. PMID 15797234.
  3. 1 2 Mercke P, Bengtsson M, Bouwmeester HJ, Posthumus MA, Brodelius PE (2000). "Molecular cloning, expression, and characterization of amorpha-4,11-diene synthase, a key enzyme of artemisinin biosynthesis in Artemisia annua L". Arch. Biochem. Biophys. 381 (2): 173–80. doi:10.1006/abbi.2000.1962. PMID 11032404.
  4. ↑ Wen W, Yu R (2011). "Artemisinin biosynthesis and its regulatory enzymes: Progress and perspective". Pharmacogn Rev. 5 (10): 189–94. doi:10.4103/0973-7847.91118. PMC 3263054Freely accessible. PMID 22279377.
  5. ↑ Yin L, Zhao C, Huang Y, Yang RY, Zeng QP (2008). "Abiotic stress-induced expression of artemisinin biosynthesis genes in Artemisia annua". Appl Environ Biol. 14: 1–5.
  6. ↑ Zeng QP, Zeng XM, Yin LL, Fent LL, Yang XQ (2009). "Quantification of three key enzymes involved in artemisinin biogenesis in Artemisia annua by polyclonal antisera-based ELISA". Plant Mol Biol. 27 (50): 7. doi:10.1007/s11105-008-0056-1.
  7. ↑ Feng LL, Yang RY, Yang XQ, Zeng XM, Lu WJ, Zeng QP (2009). "Synergistic re-channeling of mevalonate pathway for enhanced artemisinin production in transgentic Artemisia annua". Plant Sci. 177: 57–67. doi:10.1016/j.plantsci.2009.03.014.
  8. ↑ Picaud S, Mercke P, He X, Sterner O, Brodelius M, Cane DE, Brodelius PE (2006). "Amorpha-4,11-diene synthase: mechanism and stereochemistry of the enzymatic cyclization of farnesyl diphosphate". Arch. Biochem. Biophys. 448 (1-2): 150–5. doi:10.1016/j.abb.2005.07.015. PMID 16143293.
  9. ↑ Posthumus MA, Schmidt CO, De Kraker JW, Konig WA, Franssen MC (1999). "Amorpha-4,11-diene synthase catalyses the first probable step in artemisinin biosynthesis". Phytochemistry. 52 (5): 843–54. doi:10.1016/S0031-9422(99)00206-X. PMID 10626375.
  10. ↑ Wallaart TE, Bouwmeester HJ, Hille J, Poppinga L, Maijers NC (2001). "Amorpha-4,11-diene synthase: cloning and functional expression of a key enzyme in the biosynthetic pathway of the novel antimalarial drug artemisinin". Planta. 212 (3): 460–5. doi:10.1007/s004250000428. PMID 11289612.
  11. ↑ Tsuruta H, Paddon CJ, Eng D, Lenihan JR, Horning T, Anthony LC, Regentin R, Keasling JD, Renninger NS, Newman JD (2009). "High-level production of amorpha-4,11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli". PLoS ONE. 4 (2): e4489. doi:10.1371/journal.pone.0004489. PMC 2637983Freely accessible. PMID 19221601.
  12. ↑ Chang YJ, Song SH, Park SH, Kim SU (2000). "Amorpha-4,11-diene synthase of Artemisia annua: cDNA isolation and bacterial expression of a terpene synthase involved in artemisinin biosynthesis". Arch. Biochem. Biophys. 383 (2): 178–84. doi:10.1006/abbi.2000.2061. PMID 11185551.
  13. ↑ Liu B, Wang H, Du Z, Li G, Ye H (2011). "Metabolic engineering of artemisinin biosynthesis in Artemisia annua L". Plant Cell Rep. 30 (5): 689–94. doi:10.1007/s00299-010-0967-9. PMID 21184232.
  14. ↑ Martin VJ, Pitera DJ, Withers ST, Newman JD, Keasling JD (2003). "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids". Nat. Biotechnol. 21 (7): 796–802. doi:10.1038/nbt833. PMID 12778056.
  15. ↑ Paddon CJ, Westfall PJ, Pitera DJ, Benjamin K, Fisher K, McPhee D, Leavell MD, Tai A, Main A, Eng D, Polichuk DR, Teoh KH, Reed DW, Treynor T, Lenihan J, Fleck M, Bajad S, Dang G, Dengrove D, Diola D, Dorin G, Ellens KW, Fickes S, Galazzo J, Gaucher SP, Geistlinger T, Henry R, Hepp M, Horning T, Iqbal T, Jiang H, Kizer L, Lieu B, Melis D, Moss N, Regentin R, Secrest S, Tsuruta H, Vazquez R, Westblade LF, Xu L, Yu M, Zhang Y, Zhao L, Lievense J, Covello PS, Keasling JD, Reiling KK, Renninger NS, Newman JD (2013). "High-level semi-synthetic production of the potent antimalarial artemisinin". Nature. 496 (7446): 528–32. doi:10.1038/nature12051. PMID 23575629.
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